| Optics
& Biology Group - Laboratoire Kastler Brossel Département de Physique de l'Ecole normale supérieure 24, rue Lhomond 75231 Paris cedex 5, France |
www.lkb.ens.fr/recherche/optetbio/ |
| Available Tools | |
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| Sinema [free software] | |
| Sinema is a stand-alone program designed to automatically detect and track fluorescent particles in time-lapse image sequences. It is made and distributed to provide biologists and biophysicists with an easy-to-use tool for quantitatively analyzing data encountered in single molecule experiments. | |
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| Matlab scripts : |
sit2traj.zip (convert a SIT file into the TRAJ format) |
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| Useful Links | |
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| Image Correlation Spectroscopy | |
| Image Correlation Spectroscopy plugins for ImageJ and Matlab. | |
| ImageJ [free software] |
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| ImageJ Add-ons |
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| ImageJ
is a public domain Java image processing program inspired by NIH Image.
It runs, either as an online applet or as a downloadable application,
on any computer with a Java 1.1 or later virtual machine. Downloadable
distributions are available
for Windows, Mac OS, Mac OS X and Linux. |
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| Selected ImageJ Add-ons : | MTrackJ (a Java program for manual object tracking) NeuronJ (a Java program for neurite tracing) |
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| Matlab [commercial software] |
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| Matlab Add-ons |
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| Matlab©
is a high-level language and interactive environment that enables you
to perform computationally intensive tasks faster than with
traditional programming languages such as C, C++, and Fortran. |
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| Selected Matlab
Add-ons : |
Microscopy
Image Analysis Tool Particle Tracking Code Repository Read Andor SIF image files Read Metamorph STK image files |
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| Semasopht DiaTrack [commercial software] |
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| Semasopht provides a cutting-edge image analysis software for 2D and 3D particle tracking. DiaTrack is fully stand-alone and provides a compelling set of tools to extract quantitative information from image sequences, for a wide array of applications. | |